Publications

Scientific publications

This section contains all scientific publications produced by the project.

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Utility-Oriented Knowledge Graph Accuracy Estimation with Limited Annotations: A Case Study on DBpedia.

Stefano Marchesin, Gianmaria Silvello, and Omar Alonso.  Accepted to AAAI HCOMP 2024.

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BIDSAlign: a library for automatic merging and preprocessing of multiple EEG repositories”

 Andrea Zanola, Federico Del Pup, Camillo Porcaro and Manfredo Atzori. JNE 2024.

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Content-Based Dataset Retrieval Methods: Reproducibility of the ACORDAR Test Collection.

Laura Menotti, Manuel Barusco, Riccardo Forzan, and Gianmaria Silvello. Accepted to TPDL 2024. 
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Veracity Estimation for Entity-Oriented Search with Knowledge Graphs.

Stefano Marchesin, Gianmaria Silvello, and Omar Alonso. Accepted at CIKM 2024.

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SelfEEG: A Python library for Self-Supervised Learning in Electroencephalography.

Federico Del Pup, Andrea Zanola, Louis Fabrice Tshimanga, Paolo Emilio Mazzon and Manfredo Atzori. Journal of Open Source Software, 9(95), 6224.
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Efficient and Reliable Estimation of Knowledge Graph Accuracy.

Added to the the CC: Stefano Marchesin and Gianmaria Silvello. Proc. of the VLDB Endowment, Vol. 17, No. 9, 2024,

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MetaTron: advancing biomedical annotation empowering relation annotation and collaboration.

Added to the the CC: Ornella Irrera, Stefano Marchesin, and Gianmaria Silvello. BMC Bioinformatics, Vol. 25, No. 112, 2024.

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Publishing CoreKB Facts as Nanopublications.

Added to the the CC: Fabio Giachelle, Stefano Marchesin, Laura Menotti, and Gianmaria Silvello. In Proc. of the 20th Italian Research Conference on Digital Libraries (IRCDL 2024). CEUR-WS Proceedings vol. 3643, pp. 16-24, Open Access, 2024.

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Exploring the Role of Generative AI in Constructing Knowledge Graphs for Drug Indications with Medical Context.

Reham Alharbi, Umair Ahmed, Daniil Dobriy, Weronika Łajewska, Laura Menotti, Mohammad Javad Saeedizade, and Michel Dumontier. In Proc. of the 15th International Semantic Web Applications and Tools for Health Care and Life Science conference (SWAT4HCLS 2024), CEUR-WS Proceedings, Open Access, 2024. To appear.
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Spirochetosis detection in colon histopathology images via fine-tuning and boosting techniques using foundation models

Agata Polejowska, Fazael Ayatollahi, Ayse Selcen Oguz Erdogan, Francesco Ciompi, Annemarie Boleij.  Medical Imaging with Deep Learning 2024 Short Paper Submission
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Histopathobiome – integrating histopathology and microbiome data via multimodal deep learning.

Agata Polejowska, Annemarie Boleij, Francesco Ciompi. MICCAI COMPAYL 2024 Workshop.
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An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology

Guglielmo Faggioli, Laura Menotti1, Stefano Marchesin1, Adriano Chió, Arianna Dagliati, Mamede de Carvalho, Marta Gromicho, Umberto Manera, Eleonora Tavazzi, Giorgio Maria Di Nunzio, Gianmaria Silvello1, Nicola Ferro.  Journal of Biomedical Semantics 2024. 
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DROPLETS: A Marker Design for visually enhancingLocal Cluster Association

Stefan Lengauer, Peter Waldert, and Tobias Schreck. Bio+MedVis Workshop @ IEEE VIS 2024
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UNIPD@SimpleText2024: A Semi-Manual Approach on Prompting ChatGPT for Extracting Terms and Write Terminological Definitions

Giorgio Maria Di Nunzio, Elena Gallina, Federica Vezzani. Notebook for the SimpleText Lab at CLEF 2024.
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Overview of the CLEF 2024 SimpleText Task 2: Identify and Explain Difficult Concepts

Giorgio Maria Di Nunzio, Federica Vezzani, Vanessa Bonato, Hosein Azarbonyad, Jaap Kamps, Liana Ermakova. Notebook for the SimpleText Lab at CLEF 2024.
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Toward improving reproducibility in neuroimaging deep learning studies

Federico Del Pup, Manfredo Atzori. Opinion article published at Frontiers.