by Admin | Jul 10, 2026 | Hereditary
The HEREDITARY project has reached another important milestone in its third year by delivering a new set of scientific and technical results to the European Commission. At Month 30, the consortium has completed six key deliverables that reinforce the project’s vision of enabling secure, privacy-preserving and multimodal research on neurodegenerative diseases across Europe.
These results represent significant progress across several work packages, ranging from clinical use cases and federated infrastructures to artificial intelligence, legal and ethical frameworks, and privacy-preserving analytics.
From data preparation to federated multimodal ALS research
One of the most relevant achievements is the publication of D2.17: Neurodegenerative Use Cases: Intermediate Results, led by the University of Torino (UNITO). This deliverable marks an important step towards federated multimodal research on neurodegenerative diseases. Using Amyotrophic Lateral Sclerosis (ALS) as its main demonstrator, the deliverable shows how HEREDITARY is moving from use-case design to operational data readiness, integrating FAIRified datasets, semantic interoperability through the HERO ontology, privacy-preserving genomic discovery, and biological insights into a common framework for federated research. Another important aspect of this work is the systematic inclusion of sex-disaggregated analyses, helping identify biological differences that may influence disease progression, diagnosis or treatment response.
The deliverable also outlines the project’s roadmap for ontology-enabled multimodal patient stratification, combining advanced machine learning and semantic technologies to support future federated analyses across institutions. In doing so, it validates Milestone 9 and establishes the scientific and technical foundations for the next phase of HEREDITARY’s neurodegenerative use cases.
Building trustworthy federated AI through privacy-preserving analytics
The newly released D3.8: Privacy-preserving Analytics: First Release, coordinated by Aalborg University (AAU), presents the first implementation of the privacy-preserving technologies that will be integrated into HEREDITARY’s federated analytics and machine learning platform.
The report describes how multiple complementary privacy technologies, including differential privacy, secure aggregation and homomorphic encryption, can be combined to protect sensitive information while still enabling collaborative data analysis across institutions. Beyond describing the underlying algorithms, the deliverable introduces mechanisms to continuously monitor privacy risks during federated computations and evaluates how different protection levels can be adapted depending on the analytical workflow.
These developments establish the privacy layer that will support future federated AI models and formally achieve Milestone MS10, dedicated to privacy-preserving methods within HEREDITARY.
Combining biomedical data for more accurate AI models
The publication of D4.5: Multimodal Learning Methods, led by Radboud University Medical Center (RUMC), presents a new set of computational tools and machine learning methods for multimodal biomedical analysis focused on gut health.
The deliverable also evaluates different strategies for combining histopathology, microbiome and clinical data. The results show that integrating histopathology with fecal microbiome data provides the strongest predictive performance, establishing an important methodological baseline for future multimodal analyses within HEREDITARY. The deliverable also foresees the incremental publication of trained models through Grand Challenge platforms and as open-source software, supporting transparency, reproducibility and collaboration within the scientific community.
Strengthening ethical and legal foundations for European health data sharing
The consortium has released D7.2: In-depth Legal and Ethical Study, coordinated by KU Leuven, which expands the initial legal and ethical inventory developed earlier in the project.
The report analyses the regulatory challenges associated with federated research infrastructures, including GDPR compliance, secondary use of health data, governance responsibilities and cross-organisational collaboration. Rather than providing only theoretical guidance, the study evaluates these issues across HEREDITARY’s clinical use cases, offering practical recommendations for implementing secure “tool-over-data” approaches where algorithms travel to the data instead of transferring sensitive datasets.
Complementing the legal study, the consortium has also published the updated D2.2: Ethical Guidelines, Data Collection and Sharing. The document revises the project’s ethical guidance based on the experience gained during the first half of the project and reflects the evolving requirements for federated model training and multicentre collaboration. It updates recommendations for data sharing, incorporates revised procedures for prospective data collection where necessary and strengthens the links between ethical governance activities and the project’s wider regulatory framework.
Federated infrastructure Implementation
In parallel, the consortium has successfully submitted D2.12: Federated Infrastructure Implementation, marking another important technical achievement for the project. This deliverable advances the implementation of HEREDITARY’s federated infrastructure, which enables secure distributed analysis across participating institutions without centralising sensitive data. Although the deliverable has been officially delivered to the European Commission, it is not yet publicly available because parts of its content are currently under scientific review and publication.
Looking ahead
These new deliverables illustrate how HEREDITARY continues to transform its scientific vision into practical technologies and validated methodologies.
By simultaneously advancing federated infrastructures, privacy-preserving AI, multimodal machine learning, integrated clinical research and trustworthy governance frameworks, the project is steadily building an ecosystem where researchers can collaborate across Europe while keeping sensitive health data protected. As the project moves towards its next phase, these achievements provide a solid foundation for the forthcoming demonstrations, validation activities and clinical applications that will further accelerate innovation in neurodegenerative disease research.
by Admin | Jan 12, 2026 | Hereditary
The European Horizon Europe project HEREDITARY has successfully reached Month 24 of its execution, marking the halfway point of its four-year duration. This milestone confirms the project’s strong progress and consolidates the solid foundations laid during its first two years of activity, with major deliverables completed and progress achieved.
The end of 2025 closed with particularly positive news for the consortium. HEREDITARY successfully passed its first periodic review at Month 18, with all deliverables approved. Both the external reviewers and the Project Officer praised the high quality of the work, the coherence of the technical developments, and the overall advancement of the project in line with its ambitious objectives.
In December, the consortium reached another remarkable achievement: 14 deliverables were submitted in a single day, representing the highest delivery peak foreseen throughout the entire project. These deliverables span all core scientific and technical work packages, covering clinical use cases, federated and privacy-preserving data infrastructures, semantic integration, advanced analytics, visualisation tools, citizen engagement, project management, and exploitation and intellectual property planning. Altogether, they account for more than 400 pages of technical and scientific results, reflecting an extraordinary collective effort by all partners. At the end of the article, you can review the complete list of all the reports submitted. Check them all out in the Deliverables section of our website.
Among the key achievements at this midpoint, there are also two important milestones: the first operational version of the federated workflow execution engine, enabling secure and distributed analysis across institutions, on top of the federated data management infrastructure, and the progress in data FAIRification, strengthening the discoverability and alignment of HEREDITARY data resources with European initiatives and standards. Both can be consulted in Deliverables 3.2 and Deliverable 3.6, respectively.
Reaching Month 24 represents not only a quantitative success in terms of deliverables and milestones, but also a qualitative one. The results produced so far demonstrate that HEREDITARY is effectively advancing towards its vision of building a federated, interoperable and privacy-preserving ecosystem for the integration and analysis of multimodal health data, with a particular focus on neurodegenerative and gut–brain related disorders.
Looking ahead, the consortium enters the second half of the project with a clear roadmap. The coming period will focus on maturing core scientific contributions, integrating results across work packages, and consolidating HEREDITARY into a coherent and impactful ecosystem.
14 Deliverables Submitted at M24 (December 2025)
| Deliverable | Title | Brief description | Dissemination level |
|---|
| D1.5 | Risk Management Plan, 2nd report | Updated analysis of project risks identified after the second year of implementation, including mitigation and contingency measures. | EU Classified |
| D2.4 | Linkage and feature extraction from gut–brain, intermediate evaluation | Integrated brain–gut linkage and behavioural phenotyping to extract features for federated learning, including an intermediate evaluation at M24. | Public (PU) |
| D2.22 | UCD clinical studies documentation | Regulatory, ethical and data access documentation required for the UCD-led clinical studies, including approvals and MTAs where applicable. | Public (PU) |
| D3.2 | Federated workflow execution methods: first release | First release of the federated query execution engine, including intermediate implementations, optimisations, documentation and testing. | Public (PU) |
| D3.6 | FAIRification of participating data resources | Report on improvements in FAIRness of HEREDITARY data sources, with emphasis on discoverability and alignment with EU initiatives. | Public (PU) |
| D3.11 | Pilot of the genomics data science ontology interconversion | Pilot demonstrator of a clinical ontology conversion tool enabling interoperability with genomic and other biomedical data. | Public (PU) |
| D4.1 | KDE datasets and methods: first release | Open dataset including newly predicted links from the HEREDITARY knowledge graph using several knowledge graph embedding methods. | Public (PU) |
| D4.3 | Learning models and spatio-temporal harmonization | Design and first implementation of multimodal learning algorithms, self-supervised methods, and initial harmonisation libraries. | Public (PU) |
| D5.2 | Demonstrator of visualization components for sequences, networks, text, and high dimensional data | Software libraries implementing visualisation components for heterogeneous data types, including sequences, networks and text. | Public (PU) |
| D5.4 | Prototype of the visualization components for spatial, image, and simulation data | Prototype visualisation libraries addressing spatial data, biomedical images and simulation-based datasets. | Public (PU) |
| D5.7 | Requirement analysis and user studies: Initial results | Initial requirements analysis and early evaluation results derived from user studies of WP5 visual analytics tools. | Public (PU) |
| D5.10 | First evaluation challenge: report on the data, results, and integration with EOSC | Report on the first evaluation challenge, including datasets, results, open lab proceedings and integration within EOSC. | Public (PU) |
| D6.7 | World café outcome: Priorities and gaps | Synthesis of stakeholder perspectives collected during the World Café, identifying priorities and gaps relevant to HEREDITARY. | Public (PU) |
| D8.5 | Mid Term IPR plan | Mid-term Intellectual Property Rights plan outlining preliminary protection and exploitation strategies for project results. | Sensitive (SEN) |
Check them all in the Deliverables section of the website.
by Admin | Sep 2, 2025 | Hereditary
On 28 August 2025 the HEREDITARY project successfully completed its first Official Review Meeting with the Project Officer and external reviewers. During the session, the consortium showcased the main achievements of each Work Package (WP), highlighting the progress made during the first 18 months of the Project.
Reviewers commended the consortium for its strong coordination, the high quality of deliverables, the collaboration with other EU projects, and the timely progress across technical, clinical, societal and legal dimensions. The meeting was well organised and full of valuable insights that will improve the implementation of the project in its next phases.
Building a secure federated health-data network
One of the most significant milestones has been the deployment of a federated health-data infrastructure across four hospitals. This network enables secure, privacy-preserving analysis without moving sensitive data, a critical step for GDPR compliance and EHDS ambitions. The first horizontal and vertical learning experiments on ALS data were completed. The five multicentre clinical use cases that will be used to provide data and test the project’s developments have been defined: ALS prognosis, multi-disease diagnosis, Parkinson’s eye imaging, gut-brain phenotyping in healthy cohorts and gut-brain linkage in disease.
Advancing Multimodal Semantic Integration and AI Advanced Analytics
The project delivered an open HERO Ontology, integrating clinical, genomic, and imaging data plus a live SPARQL explorer. Together with a polystore prototype, this provides a unified semantic view across diverse health data sources: compiling 9000 candidate terms and 1700 concepts for a multilingual medical terminology hub. PrivEval was also delivered: a hands-on tool that assesses privacy leakage in synthetic datasets.
New AI tools such as PubMiner, an LLM pipeline that converts PubMed articles into knowledge-graph triples, are already contributiong to biomarker discovery in ALS. At the same time, multimodal self-supervised models are already outperforming single-modality baselines on internal EEG, MRI and omics benchmark.
Innovative visualisation and citizen engagement
We require advanced visualisation techniques to interact with large volumes of data. That is why the consortium launched award-winning visualisation tools like Droplets and interactive platforms such as OnSET and ALviS, offering new ways to explore complex health data.
At the same time, Health Social Labs (HSLs) have been activated across Europe to engage citizens, patients, and clinicians in co-design activities, ensuring that HEREDITARY’s advances are socially robust and aligned with real-world needs.
Ethics, law, and policy alignment
A comprehensive inventory of GDPR, Data Governance Act, AI Act, and cybersecurity requirements has been completed, embedding privacy and ethics by design. Also, a FAIR-compliant Data Management Plan an ethics playbook aligned with those regulations were delivered. Reviewers highlighted this as a unique strength of HEREDITARY, demonstrating how technical innovation is matched with legal and ethical foresight.
All these advances can be consulted and expanded upon through the 44 scientific publications available on Zenodo, 23 deliverables and the new Open Hub web section, which ensure widespread dissemination of the project.
Overall, the first 18 months of HEREDITARY have laid a strong foundation for achieving its objectives. With its federated platform, semantic integration tools, advanced AI, and legal analysis, the project is already delivering results beyond the state of the art, bringing Europe closer to a trusted, cross-border health data ecosystem that enables early and more effective diagnosis and treatment strategies for ALS, Parkinson’s and gut–brain disorders.
by Admin | Jan 13, 2025 | Hereditary
As we mark the first year of the Hereditary project, we are thrilled to reflect on the significant milestones we’ve achieved together. This year has been a testament to our collective strength, collaboration, and shared commitment to success. With over 100 individuals from 18 institutions across Europe and the US, the Hereditary project has laid a solid foundation for what is sure to be a fruitful and impactful journey ahead.
One of our most notable achievements this year has been the delivery of 16 high-quality deliverables, all on time, demonstrating our efficiency and dedication to project development. We are particularly proud of our December (12th month of the project) performance, where we successfully delivered 7 deliverables, ensuring we closed the year with impressive momentum. These deliverables are now available on our website, and we encourage anyone interested to consult those that are publicly accessible, on our zenodo profile.
16 deliverables in 12 months of existence
The deliverables produced during this first year of the project materialise the consortium’s progress in several of the 5 interconnected layers that make up the project will develop to integrate multimodal health data.
- Regarding the Federated Networking Infrastructure, we have defined the ethical guidelines for data collection and sharing for model training, as outlined in Deliverable 2.1 (D2.1) led by Università degli Studi di Torino (UNITO). Additionally, we set up the local computing and storage infrastructures in the medical centers, documented in D2.14, led by SURF BV (SURF).
- In terms of the clinical use cases we focus on, and the data we work with, we have established guidelines for data harmonization and provided evidence-based criteria for the design of neurodegenerative in D2.16, and the documentation for all the required approvals for the clinical studies in D2.19, both led by UNITO. We also conducted the initial evaluation of the integrated brain-gut linkage and behavioral phenotyping for feature extraction in federated learning, documented in D2.3 led by Radboudumc (RUMC).
- In the Multimodal Semantic Integration Platform, we have developed the conceptual and linguistic systems that describe the medical terminology in D3.4 led by Universidade NOVA de Lisboa (UNL).
- An important milestone in the project has been the development of the semantic ontology modeling concepts and processes for neurological diseases (Amyotrophic Lateral Sclerosis and Multiple Sclerosis), which includes a preliminary online version of the semantic ontology focusing on these diseases, as well as the design of federated execution methods, documented in D3.1 led by Università degli Studi di Padova (UNIPD). It synthesizes WP2, WP3, and WP4 contributions to provide a comprehensive framework for integrating clinical and genomic data through advanced ontology design and scalable query execution frameworks.
- The Visual Analytics and Interaction layer has been enriched with the development of the initial conceptualization of the software libraries and documentation for visualization of sequences, networks, text, and high-dimensional data, as well as spatial, image, and simulation data, in the deliverables D5.1 and D5.3, led by Technische Universität Graz (TUGRAZ) and SURF.
In addition, during these first 12 months, Work Package 1 has built the architecture on which the management and execution of the project will be based, through the delivery of the Data Management Plan (D1.1, led by the European Molecular Biology Laboratory (EMBL)), the Quality Assurance and self-assessment Plan (D1.3, led by UNIPD) and the Risk Management Plan (D1.4, led by the European Brain Council (EBC)). In Work Package 6, guidelines for organising and implementing the Health Social Labs methodology were established in D6.1, elaborated by Observa Associazione (OBSERVA). In Work Package 7, KU Leuven developed the preliminary overview of the legal and ethical requirements applicable to the HEREDITARY project in D7.1. And, finally, FEUGA led through D8.1 and D8.4, the initial release of dissemination, communication, IP and exploitation plan, including the project webpage, Book of Style, and social media accounts creation.
What’s next for the HEREDITARY project?
Looking ahead to 2025, we are excited to build upon this motivation, continuing our collaborative efforts and addressing any uncertainties or questions openly to stay aligned. The groundwork for ongoing collaboration has been laid, and the future is bright. Big thanks to our partners and all the people involved in the project for their hard work and dedication. Now it’s time to focus on another year of success and growth in the Hereditary project!
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